Discriminating accessions by SNPs and/or morphological traits

Users can select SNPs and/or phenotypic traits to retrieve accessions that match the criteria, with results highlighting SNPs with the highest PIC values. This mode helps accurately distinguish varieties based on genetic and morphological data.

Identifying most discriminative SNPs

This tool helps identify the SNPs that are most effective in distinguishing between recorded accessions. By selecting an accession, the platform provides a list of the minimum number of SNPs and associated alleles that are most effective for its discrimination and characterization. This feature is especially valuable for developing specific KASP protocols.

Searching user-defined genotype strings

Users can input genotype strings (concatenated SNP loci ordered by chromosome and position) to calculate the genetic distance between new and previously genotyped accessions. This function aids in the classification of new varieties by comparing their genetic profiles with existing data.